You can run command line commands right from IntelliJ IDEA. Just configure the commands that fit your preferences and needs as a command line tool and register it in IntelliJ IDEA. You can have as many command line tools as you need.
Integration with command line tools is provided at the IntelliJ IDEA level, so once configured, a tool can be used in all your IntelliJ IDEA projects. Just activate or de-activate it when necessary depending on the needs of each specific project.
The plugin is not bundled with IntelliJ IDEA, but it is available from the JetBrains plugin repository. Once enabled, the plugin is available at the IDE level, that is, you can use it in all your IntelliJ IDEA projects.