PyCharm 2019.2 Help

Jupyter notebook support

With Jupyter Notebook integration available in PyCharm, you can easily edit, execute, and debug notebook source code and examine execution outputs including stream data, images, and other media.

Notebook support in PyCharm includes:

  • Editing and preview:

    • Ability to present a notebook as source code with textual cell definitions and manipulate cells as regular code.

    • Live preview of the cell execution output and Markdown content.

    • Auto-saving changes that you make in your files. Saving is triggered by various events, for example, closing a file or a project, or quitting the IDE.

  • Coding assistance:

  • Ability to run cells and preview execution results.

  • Dedicated Jupyter Notebook Debugger.

  • Shortcuts for basic operations with Jupyter notebooks.

  • Ability to recognize .ipynb files and mark them with the ipynb file icon icon.

Quick start with the Jupyter notebook in PyCharm

To start working with Jupyter notebooks in PyCharm:

  1. Create a new project, specify a virtual environment, and install the jupyter package.

  2. Open or create an .ipynb file.

  3. Add and edit source cells.

  4. Execute any of the code cells to launch the Jupyter server.

  5. Analyze execution results in the Preview pane.

Get familiar with the user interface

In PyCharm, you can work with Jupyter notebook files using three viewing modes:

In this mode, you can add notebook cells and edit them.

Editor only mode

In this mode, you can both edit cells and preview their output. This is the default viewing mode for Jupyter notebooks in PyCharm.

Editor and preview mode

In this mode, you can preview markdown and raw cells as well as code cell execution results.

Preview only mode

Editing and preview modes reflect the currently selected PyCharm user interface appearance.

The Jupyter notebook toolbar provides quick access to all basic operations with notebooks:

Jupyter toolbar

Toolbar element


List of Jupyter servers

The Jupyter Server widget that shows the currently used Jupyter server. Click the widget and select Configure Jupyter Server to setup another local or remote Jupyter server.

List of Jupyter kernels

List of the available Jupyter kernels.

Run all cells

Executes all cells in the notebook.

Interrupt the kernel

Click this icon if you want to interrupt any cell execution or restart the currently running kernel.

Jupyter Quick List

Opens the Jupyter Quick List for easy access to the basic notebook operations:

  • Run All: Executes all cells in the notebook.

  • Run Cell: Executes the current cell Ctrl+Enter.

  • Run All Above: Executes all cells above excluding the current cell.

  • Run All Below: Executes the current cell and all cells below.

  • Run Cell and Select Below: Executes the current cell and navigates to the below cell (Shift+Enter.

  • Debug Cell: Starts the debugging session for the current cell (Shift+Alt+Enter for Windows or ⌥⇧↩ for macOS).

  • Insert Cell Above: Adds a new code cell above the current cell (Shift+Alt+A for Windows or ⌥ ⇧ A for macOS).

  • Insert Cell Below: Adds a new code cell below the current cell (Shift+Alt+B for Windows or ⌥ ⇧ B for macOS).

  • Select Cell Above: Selects the cell above the current cell.

  • Select Cell Below: Selects the cell below the current cell.

  • Clear Outputs: Erases all execution output in the Preview area.

  • Start Jupyter Server: Launches the Jupyter server.

  • Stop Jupyter Server: Stops the Jupyter notebook.

  • Configure shortcuts: Opens the Settings/Preferences | Keymap dialog to alter the default keymaps.

Datalore icon

Upload to Datalore/Update uploaded notebook. Enables sharing the selected Jupyter notebook using Datalore, an intelligent web application for data analysis. Click this button to start sharing the current notebook file. Once you modify the notebook file, this button enables updating the shared notebook in Datalore.

Scroll from source

Enables auto scrolling from the source cell in the Editor to the corresponding output in the Preview pane.

Scroll to source

Enables auto scrolling from the cell output in the Preview pane to the corresponding source cell in the Editor.

Show sources in preview

Click this icon to show source code fragments in the Preview pane.

Editor only viewing mode

Click this icon to switch into the editor only viewing mode.

Editor and preview viewing mode

Click this icon to show both Editor and the Preview pane.

Preview only mode

Click this icon to switch into the preview only mode.

The Server Log tab of the Jupyter tool window appears when you have any of the Jupyter server launched. The Server log tab of this window shows the current state of the Jupyter server and the link to the notebook in a browser.

Jupyter server tool window: the Server log tab

It also provides controls to stop the running server (Stop the server) and launch the stopped server Run the server.

The Variables tab provides the detailed report about variable values of the executed cell.

Jupyter server tool window: the Variables tab

You can use the Settings icon to manage the variables loading policy.

Refer to the following topics for more information about Jupyter Notebook support in PyCharm:

Last modified: 6 November 2019